At the same time, the government has little reason to hassle people who aren't fringe minorities. Private companies have strong incentives to use data collection against the masses.
I don't buy either side of that statement. Government does hassle the masses, and I'm not sure what incentives private companies have to use data collection on the masses. My argument for the latter is probably a little weak, but certainly in the former, history is clear.
Of course, collecting metadata -- especially via centralized services like Google Analytics -- means you're creating a very tempting trove of information for both the government and private entities that may make use of it to your users' disadvantage.
FWIW: I've not received anything but EFF-related spam from EFF to the email address I used to donate to them back in the day.
Not sure about ACLU.